Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1473
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 144 KQTRSRFSQVPVMGAFSPLDPSSFSRPEQAVIK 242
           K  R+RF  +P++ + +  DP  F  P + V++
Sbjct: 222 KSARTRFDILPLILSANGHDPDYFDIPNELVLE 254


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = +3

Query: 471  GDKLKIKIKYTTSPSATALQWLQPAQTSGKKHPY-LFSQC-----QPIHARSILPCQDTP 632
            G    IK+   +SP A  + WL P + +G    Y L+++      +  H +  LP ++T 
Sbjct: 1215 GSPADIKV-VVSSPQALFISWLPPLEPNGIITKYNLYTRVVDGREELNHGKRTLPAKNTY 1273

Query: 633  F 635
            F
Sbjct: 1274 F 1274


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = +3

Query: 471  GDKLKIKIKYTTSPSATALQWLQPAQTSGKKHPY-LFSQC-----QPIHARSILPCQDTP 632
            G    IK+   +SP A  + WL P + +G    Y L+++      +  H +  LP ++T 
Sbjct: 1211 GSPADIKV-VVSSPQALFISWLPPLEPNGIITKYNLYTRVVDGREELNHGKRTLPAKNTY 1269

Query: 633  F 635
            F
Sbjct: 1270 F 1270


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 183 GAFSPLDPSSFSRPEQAV 236
           GA S +DP ++  P QAV
Sbjct: 604 GARSYVDPHTYEDPNQAV 621


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,955
Number of Sequences: 438
Number of extensions: 3251
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)