Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1468
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    24   0.94 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.7  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 356 RRATRGKTMPPRKRRN-EAHRP 418
           RRAT GK  P RK+R  E  RP
Sbjct: 11  RRATGGKRKPIRKKRKFELGRP 32


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 282 VRRGLEPGPGAKGEGTGREVPARAHAEPREGR 377
           ++ G EPG G   +  G   P  AH   R+GR
Sbjct: 167 LQMGFEPGKGLGKQLQGISTPVEAHL--RKGR 196


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 17/70 (24%), Positives = 26/70 (37%)
 Frame = +1

Query: 154  SSGEKDVPRDEFGRVAVRETHAVAEAQQEKNARLRDAFGISPRFVEGSSLDPERRAKEQA 333
            SS E  +PRD+      R     A +QQ+    +R    +  +    S   P  R  + +
Sbjct: 1290 SSLETGIPRDQRAMTEARNQQQQASSQQQIPESMRSK-ALIDQLCRNSRRTPVPRLAQDS 1348

Query: 334  ERYPLVRTPS 363
                  R PS
Sbjct: 1349 SEDESYRGPS 1358


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 323 FALRSGSRLEPSTNR 279
           F +   SRLEP TN+
Sbjct: 230 FGMTDNSRLEPGTNK 244


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 45  LPFPLMIEYFSIWLF 1
           LPF    E F +W+F
Sbjct: 119 LPFSATWEVFKVWIF 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.309    0.130    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,760
Number of Sequences: 438
Number of extensions: 2516
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)