Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1467
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   1.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   9.2  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +2

Query: 149 RLADELRAEQDHAQTQEKLRKALEQQIKEL-QVRLDEAEANALKGGKKAIQKLEQRVREL 325
           R+   L + ++H     +     EQQ KE+ Q+R  E E         + Q+ +Q+ ++ 
Sbjct: 40  RVYSSLNSLRNHKSIYHRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQ 99

Query: 326 ENELDGEQRR 355
           +++   +Q R
Sbjct: 100 QDQQQQQQSR 109


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 25  PLCRQEETRVRAANPAL 75
           P CR++   + AANP L
Sbjct: 99  PSCRRQRYNIAAANPLL 115


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +2

Query: 227 IKELQVRLDEAEANALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKN 376
           +K  ++  D+++        K +QK +  ++E ENE+D +     D  K+
Sbjct: 487 LKNTEIFKDKSDWFDYSEVSKWVQKGQICLKEKENEIDFKIEVTEDCNKS 536


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.129    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,907
Number of Sequences: 438
Number of extensions: 574
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)