Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1460
         (467 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    41   6e-06
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    41   6e-06
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   1.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   6.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.7  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 41.1 bits (92), Expect = 6e-06
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +2

Query: 77  CPENEERTCLQGLCRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCIPQDKC 256
           CP NE  +   G C+ + C        C  +    C  GC C++GYLR++   C+P+ KC
Sbjct: 37  CPSNEIFSRCDGRCQ-RFCPNVVPKPLCIKI----CAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 37.1 bits (82), Expect = 9e-05
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = +2

Query: 269 CPLTEYFTNCAKGMCRQENCTELGKLSECKTQSTELCEPGCVREGGFLRSTNGTCVSIDE 448
           CP  E F+ C  G C Q  C  +     C     ++C PGCV   G+LR+    CV   +
Sbjct: 37  CPSNEIFSRC-DGRC-QRFCPNVVPKPLC----IKICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 449 C 451
           C
Sbjct: 91  C 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 41.1 bits (92), Expect = 6e-06
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +2

Query: 77  CPENEERTCLQGLCRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCIPQDKC 256
           CP NE  +   G C+ + C        C  +    C  GC C++GYLR++   C+P+ KC
Sbjct: 37  CPSNEIFSRCDGRCQ-RFCPNVVPKPLCIKI----CAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 37.1 bits (82), Expect = 9e-05
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = +2

Query: 269 CPLTEYFTNCAKGMCRQENCTELGKLSECKTQSTELCEPGCVREGGFLRSTNGTCVSIDE 448
           CP  E F+ C  G C Q  C  +     C     ++C PGCV   G+LR+    CV   +
Sbjct: 37  CPSNEIFSRC-DGRC-QRFCPNVVPKPLC----IKICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 449 C 451
           C
Sbjct: 91  C 91


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = +2

Query: 128 KCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCIPQDKCPTVP 268
           K ++    +  Q  D      G    I Y+ DENG  +     PT P
Sbjct: 61  KQVDNETPVVSQGSDSYTAPDGQQVSITYVADENGFQVQGSHIPTAP 107


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 202 QNRISERRKWNLYTAR 249
           QNR  E   WNL T R
Sbjct: 30  QNRSQEEDLWNLATDR 45


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic
          acetylcholine receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 59 VLCTATCPENEER 97
          V C   C E+EER
Sbjct: 17 VFCVGLCSEDEER 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,847
Number of Sequences: 438
Number of extensions: 2910
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)