Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1459
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    30   0.018
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.6  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   3.6  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   3.6  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   3.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.3  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -2

Query: 517 LFLVFLLCMSDILGNSSICLR-TYIKFSKMYWDGIVRTLISLNFSLRDSLECM-L*IARI 344
           + LV L CM D   NS ICL    +K   ++     R L+   F   + +  + L  A +
Sbjct: 278 VLLVRLACMFDAQTNSMICLNGQVLKRESIHNSSNARFLMDSMFDFAERVNSLRLSDAEL 337

Query: 343 ALFCRINIIS 314
            LFC + +I+
Sbjct: 338 GLFCSVVVIA 347


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 488 RHLRKLLNMFTNIHQIFK 435
           RH+R  LN   N+H+  K
Sbjct: 91  RHVRDFLNGLDNLHEYLK 108


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 336 KRAIRAIYNMHSRESLREKFKEIKVLTMPSQYIFENLMYVRKHIEEFPK 482
           KRA      M  ++SL E   EIK  T   Q      +Y+  + E++ K
Sbjct: 108 KRAPMGFQGMRGKKSLEEILDEIKKKTTRFQDSRSKDVYLIDYPEDYGK 156


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 336 KRAIRAIYNMHSRESLREKFKEIKVLTMPSQYIFENLMYVRKHIEEFPK 482
           KRA      M  ++SL E   EIK  T   Q      +Y+  + E++ K
Sbjct: 108 KRAPMGFQGMRGKKSLEEILDEIKKKTTRFQDSRSKDVYLIDYPEDYGK 156


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 336 KRAIRAIYNMHSRESLREKFKEIKVLTMPSQYIFENLMYVRKHIEEFPK 482
           KRA      M  ++SL E   EIK  T   Q      +Y+  + E++ K
Sbjct: 108 KRAPMGFQGMRGKKSLEEILDEIKKKTTRFQDSRSKDVYLIDYPEDYGK 156


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 155 RSPLQFGVHCYTKK 114
           R PLQFG   YTK+
Sbjct: 143 RCPLQFGSFGYTKR 156


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 550 IRYEIHSGVCLCACTTKSHKMFRTYIYIGLRKLLKNIC 663
           + Y + SG+ LC   T +  +  T I  G+++     C
Sbjct: 694 LSYVLLSGILLCYLVTFALVLRPTDIVCGIQRFAAGFC 731


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,214
Number of Sequences: 438
Number of extensions: 3741
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)