Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1455
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    29   0.041
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     25   0.67 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   1.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.3  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   8.3  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   8.3  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   8.3  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   8.3  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   8.3  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 0.041
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = +3

Query: 303 KIYKMNRNHLNNTQRTVTGIFNHQKVKRDRNEKSKIFLGTLTKVI*NLKNQKSRNIATNI 482
           K YK  R +    + T    F  ++ +R+R+++SKI      K I N  N K+ N     
Sbjct: 281 KSYKNEREY-RKYRETSKERFRDRR-ERERSKESKIISSLSNKTIHNNNNYKNYNKKLYY 338

Query: 483 NLVNI 497
           N++NI
Sbjct: 339 NIINI 343


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 288 KVYPPKIYKMNRNHLNNTQRTVTGIFNHQKVKRDRNEK 401
           K++P K Y+MN N++ N +   + IF  ++  RD   K
Sbjct: 149 KIWPFKEYQMNGNNITNFKN--SNIFQLKQHMRDTMNK 184


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 342 QRTVTGIFNH-QKVKRDRNEKSKIFLGTLTK 431
           +R ++   +H +K K+ RNE SKI L + TK
Sbjct: 2   KRNISNYSHHDEKFKQLRNEDSKIDLRSRTK 32


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 563 KKESRHKDDIKKPIQNEVKGVDKH 634
           KK   +KD  K+P+ NE + + +H
Sbjct: 122 KKTMENKDITKRPLPNESQLIKRH 145



 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +3

Query: 375 KVKRDRNEKSKIFLGTLTKVI*NLKNQKSRNIATNINLV 491
           K+KR   +  KI      K+I   +  K++N+   +N++
Sbjct: 444 KIKRLFGKDRKIMDMVREKIIEEKRKNKNKNLTPAVNII 482


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 131 NNTTLKLNEESTDQKSYSHNDTTLKITEIE 220
           N+TT K N  +   +S+ +N+T + I ++E
Sbjct: 177 NSTTGKRNVVTPIVQSFDYNNTWVYIADVE 206


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 158 ESTDQKSYSHNDTTLKITEIETSEQTSDDEEVKPKT 265
           E  + + Y   D     T I+TSE ++  + +KP T
Sbjct: 454 ERYEVRCYPRYDDATNATVIQTSELSATFKGLKPST 489


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +2

Query: 173 KSYSHNDTTLKITEIETSEQTSDDEEVKPKTLVINITLQ 289
           K+Y H  T LK+      E   +   +    +  N+T+Q
Sbjct: 36  KNYDHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQ 74


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +3

Query: 303 KIYKMNRNHLNNTQRTVTGIFNHQKVKRDRNEKSKIFLGTLTKVI*NLKNQKSRNIATNI 482
           K YK N N     + T       +K +R+R+++ KI      K I N  N   +    NI
Sbjct: 48  KSYK-NENSYRKYRETSKERSRDRK-ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105

Query: 483 NLV 491
           N +
Sbjct: 106 NYI 108


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +3

Query: 303 KIYKMNRNHLNNTQRTVTGIFNHQKVKRDRNEKSKIFLGTLTKVI*NLKNQKSRNIATNI 482
           K YK N N     + T       +K +R+R+++ KI      K I N  N   +    NI
Sbjct: 48  KSYK-NENSYRKYRETSKERSRDRK-ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105

Query: 483 NLV 491
           N +
Sbjct: 106 NYI 108


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +3

Query: 303 KIYKMNRNHLNNTQRTVTGIFNHQKVKRDRNEKSKIFLGTLTKVI*NLKNQKSRNIATNI 482
           K YK N N     + T       +K +R+R+++ KI      K I N  N   +    NI
Sbjct: 48  KSYK-NENSYRKYRETSKERSRDRK-ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105

Query: 483 NLV 491
           N +
Sbjct: 106 NYI 108


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +3

Query: 303 KIYKMNRNHLNNTQRTVTGIFNHQKVKRDRNEKSKIFLGTLTKVI*NLKNQKSRNIATNI 482
           K YK N N     + T       +K +R+R+++ KI      K I N  N   +    NI
Sbjct: 48  KSYK-NENSYRKYRETSKERSRDRK-ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105

Query: 483 NLV 491
           N +
Sbjct: 106 NYI 108


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +3

Query: 303 KIYKMNRNHLNNTQRTVTGIFNHQKVKRDRNEKSKIFLGTLTKVI*NLKNQKSRNIATNI 482
           K YK N N     + T       +K +R+R+++ KI      K I N  N   +    NI
Sbjct: 281 KSYK-NENSYRKYRETSKERSRDRK-ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 338

Query: 483 NLV 491
           N +
Sbjct: 339 NYI 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,337
Number of Sequences: 438
Number of extensions: 3020
Number of successful extensions: 20
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)