Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1454
         (316 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    20   6.2  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    20   6.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   8.1  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 88  KILNWNNQI 62
           KI  WNNQI
Sbjct: 92  KIYKWNNQI 100


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 88  KILNWNNQI 62
           KI  WNNQI
Sbjct: 75  KIYKWNNQI 83


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 139 QNKKSEL*THTKIGYLRKILNWNN 68
           Q KKS +  HTK G L+  ++ N+
Sbjct: 428 QLKKSSVLVHTKNGRLKYQISDND 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,911
Number of Sequences: 438
Number of extensions: 1425
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)