Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1448
         (461 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   3.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   4.9  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.5  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   8.5  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   8.5  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   8.5  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   8.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   8.5  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   8.5  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 127 SKIVSGLCYRDVNNNN 174
           SKI+S L  + ++NNN
Sbjct: 312 SKIISSLSNKTIHNNN 327


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 130 KIVSGLCYRDVNNNN 174
           KI+S L  R ++NNN
Sbjct: 80  KIISSLSNRTIHNNN 94


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 130 KIVSGLCYRDVNNNNF 177
           KI+S L    ++NNN+
Sbjct: 79  KIISSLSNNTIHNNNY 94


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 130 KIVSGLCYRDVNNNNF 177
           KI+S L    ++NNN+
Sbjct: 79  KIISSLSNNTIHNNNY 94


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 130 KIVSGLCYRDVNNNNF 177
           KI+S L    ++NNN+
Sbjct: 80  KIISSLSNNTIHNNNY 95


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 130 KIVSGLCYRDVNNNNF 177
           KI+S L    ++NNN+
Sbjct: 80  KIISSLSNNTIHNNNY 95


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 130 KIVSGLCYRDVNNNNF 177
           KI+S L    ++NNN+
Sbjct: 80  KIISSLSNNTIHNNNY 95


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 130 KIVSGLCYRDVNNNNF 177
           KI+S L    ++NNN+
Sbjct: 80  KIISSLSNNTIHNNNY 95


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 315 FINSNYLINLTPS 277
           F+ ++YL  LTPS
Sbjct: 283 FVENSYLAGLTPS 295


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 130 KIVSGLCYRDVNNNNF 177
           KI+S L    ++NNN+
Sbjct: 313 KIISSLSNNTIHNNNY 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,464
Number of Sequences: 438
Number of extensions: 2405
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)