Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1440
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.68 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   6.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   8.3  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 369 PPDVKWSPKPIDINNVIGAGNIEAQVLSHIFI 464
           PPD  W P  +  NN    GN E +  S++ I
Sbjct: 104 PPDKVWKPDIVLFNN--ADGNYEVRYKSNVLI 133


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 427 VILRHKF*VTFL*YNGRLKPKRISASENLR*EPPTH 534
           ++L+H+   + +  + +LK  RI  +E L  +P TH
Sbjct: 655 MMLKHREFRSSIKASDKLKDSRIKTTEKLSTDPNTH 690


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 283 QRHLVLSCQIIYVIFLCDMMM*INFDISDIS 191
           +RHL+LSCQ    IF  D  +  +F I  IS
Sbjct: 179 RRHLILSCQGRLNIFPFDDPL-CSFAIESIS 208


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 283 QRHLVLSCQIIYVIFLCDMMM*INFDISDIS 191
           +RHL+LSCQ    IF  D  +  +F I  IS
Sbjct: 179 RRHLILSCQGRLNIFPFDDPL-CSFAIESIS 208


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 283 QRHLVLSCQIIYVIFLCDMMM*INFDISDIS 191
           +RHL+LSCQ    IF  D  +  +F I  IS
Sbjct: 230 RRHLILSCQGRLNIFPFDDPL-CSFAIESIS 259


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 283 QRHLVLSCQIIYVIFLCDMMM*INFDISDIS 191
           +RHL+LSCQ    IF  D  +  +F I  IS
Sbjct: 179 RRHLILSCQGRLNIFPFDDPL-CSFAIESIS 208


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 272 SSELPDYICDFFMRHD 225
           S  LP ++CDF++  D
Sbjct: 251 SWSLPGFVCDFYIAMD 266


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = -1

Query: 647 PCGLTRGPTTSKQPLQTL*DKEKGKISKYNLVIMSSYRWVGGSHLKFS 504
           P G+  G +    P QTL +KE   +    + ++  +  VG  +++++
Sbjct: 66  PLGIHTGESIVVAPSQTLSNKEYNMLRTTAINVIRHFGIVGECNIQYA 113


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 396 PIDINNVIGAGNIEAQVLSHIFI 464
           P+D   V   GN+  ++ +H+FI
Sbjct: 793 PMDATEVYLDGNVLRELQNHVFI 815


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 565 LLIFPFSLSQRVCRG 609
           LL+ PF   +R+C G
Sbjct: 454 LLVAPFGAGRRICPG 468


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,477
Number of Sequences: 438
Number of extensions: 4110
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)