Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1436
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    96   1e-22
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.33 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   9.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      20   9.5  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 96.3 bits (229), Expect = 1e-22
 Identities = 45/105 (42%), Positives = 64/105 (60%)
 Frame = +2

Query: 65  ILKQESSIEPDGSYQYSYETGNGISAAERGALKNIGAEEPALQVEGQFQYPSEDGGTIQL 244
           I  Q+  +  DG+Y  ++ET NGIS  E G  K +  E P +  +G   Y + DG  + +
Sbjct: 29  ITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDGQQVSI 87

Query: 245 SYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPPQPENNRP 379
           +Y+A+ENGFQ QGSH+PT PPIP  IQRAL + A  P + +  +P
Sbjct: 88  TYVADENGFQVQGSHIPTAPPIPPEIQRALEWNAAHPEEDDGGQP 132


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 0.33
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 207 SSTQARTVVLSSCPTSPMRTASSLRDHIYP 296
           +S+ A T+VLS CP++ M     + D   P
Sbjct: 845 ASSTAATLVLSGCPSNMMELQVDIADSQQP 874


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 47  TTEPIPILKQESSIEPDGSYQYS 115
           T E +P     +S+EPD    YS
Sbjct: 79  TEEKLPKTSSNASVEPDSKVTYS 101


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 254 ANENGFQPQGSHLPTPPPIPEVIQ 325
           AN N +QP    +P PP    V Q
Sbjct: 752 ANVNLWQPLSVSIPPPPSAQNVPQ 775


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 340 VCESALDDFRNWGW 299
           VC+ A ++  NW W
Sbjct: 61  VCDVAYNNVNNWLW 74


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 306 GGGVGKCDP*G 274
           GGG+G C P G
Sbjct: 967 GGGMGGCQPGG 977



 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +2

Query: 302  PPIPEVIQRALAYLATAPPQPENNRP 379
            PP P   Q+  A     P   E N+P
Sbjct: 999  PPQPANAQQGQAQAQAKPQSQEANKP 1024


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 330 LSHTSPPHPHSLKTTG 377
           + HT   HPH  +T G
Sbjct: 459 IGHTPHHHPHPPETPG 474


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 126 EMVSPLPSEALSKTSALK 179
           +++  LPS+ LSK   LK
Sbjct: 278 KIIPTLPSDKLSKIQTLK 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,873
Number of Sequences: 438
Number of extensions: 2993
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)