Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1430
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.3  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 462 SRSPSSQATGSTRPNFAEILTN 527
           +RSPSSQA  S  P  A +L++
Sbjct: 680 ARSPSSQAQASQCPQTASLLSS 701


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 609 ATSPSVKDMGRPDRPRV 659
           ATSP++   G P+RP V
Sbjct: 834 ATSPNLTKWGNPNRPIV 850


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 457 INPQTKPTEFLDGSSRWVAFP 395
           INP TK  EF+ G  R +  P
Sbjct: 395 INPWTKKLEFVVGQHRILKGP 415


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 457 INPQTKPTEFLDGSSRWVAFP 395
           INP TK  EF+ G  R +  P
Sbjct: 101 INPWTKKLEFVVGQHRILKGP 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,437
Number of Sequences: 438
Number of extensions: 3379
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)