Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1424
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    41   9e-06
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    40   3e-05
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 41.1 bits (92), Expect = 9e-06
 Identities = 21/65 (32%), Positives = 27/65 (41%)
 Frame = +1

Query: 91  CADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRRAANGTCIPT 270
           C  +EI  +C   C   +CP       +  PKP      AP C CR  Y R     C+P 
Sbjct: 37  CPSNEIFSRCDGRCQR-FCP-------NVVPKPLCIKICAPGCVCRLGYLRNKKKVCVPR 88

Query: 271 RECPP 285
            +C P
Sbjct: 89  SKCLP 93



 Score = 32.3 bits (70), Expect = 0.004
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 490 CPENEERTCLQGLCRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCI 654
           CP NE  +   G C+ + C        C  +    C  GC C++GYLR++   C+
Sbjct: 37  CPSNEIFSRCDGRCQ-RFCPNVVPKPLCIKI----CAPGCVCRLGYLRNKKKVCV 86


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = +1

Query: 91  CADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRRAANGTCIPT 270
           C  +EI  +C   C   +CP       +  PKP      AP C CR  Y R     C+P 
Sbjct: 37  CPSNEIFSRCDGRCQR-FCP-------NVVPKPLCIKICAPGCVCRLGYLRNKKKVCVPR 88

Query: 271 REC 279
            +C
Sbjct: 89  SKC 91



 Score = 32.3 bits (70), Expect = 0.004
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 490 CPENEERTCLQGLCRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCI 654
           CP NE  +   G C+ + C        C  +    C  GC C++GYLR++   C+
Sbjct: 37  CPSNEIFSRCDGRCQ-RFCPNVVPKPLCIKI----CAPGCVCRLGYLRNKKKVCV 86


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 182 RSLRAPTVQRQPANVDLTTDAQPTERAYRL-ENALLSIV 295
           R  R  T ++Q   + L   AQP   AY+  E  ++S V
Sbjct: 271 RDFRDRTTEQQHKAMFLVVTAQPVHSAYKAPEETIISSV 309


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 338 GQKGGQGLYSSLSPSQSKGGHSLVGMHVP 252
           G +G QG+   L   Q   G  + GM+VP
Sbjct: 867 GVQGVQGVPGLLQGVQQVFGQGVQGMNVP 895


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 259  CIPTRECPP 285
            C P R CPP
Sbjct: 1695 CAPNRRCPP 1703


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,619
Number of Sequences: 438
Number of extensions: 5002
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)