Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1415
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.36 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.47 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 373  GYTSRP-ININTADIDVSRDKYKQKVEDSSAL 465
            G TS+P + +N   I VSR+K  QKVE++  +
Sbjct: 1522 GTTSQPEVFVNGEKIVVSRNKAYQKVEENEII 1553


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 226 TPLSSRWIPGVGRCYAPI-LSTISERSTASPSRINSPRR 339
           TP  S +IP   R Y+PI    ++ RS A+    N+  R
Sbjct: 661 TPAESTFIPEERRIYSPITFQDVARRSVANSPTKNADSR 699


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 268 YAPILSTISERSTASPSRINSPRRIPLSKRNYSSSGYTSRPININT 405
           Y P  + +++R  A  SRI      PL +     +G T+ P  I T
Sbjct: 367 YRPGENPVTQRLPAVLSRIGIILASPLKREGGPPTGATTGPNEIVT 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,588
Number of Sequences: 438
Number of extensions: 4575
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)