Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1407
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.7  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   6.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.2  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -3

Query: 164 PSSQTTISLGRTRKSRTWPHRNYLQPQSTRSNTHI 60
           P+    ++L     + TWP R   +P+     TH+
Sbjct: 380 PNGTEKMTLSVNESNITWPGRLQTKPEGFMIPTHL 414


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +1

Query: 568 RSHS--HGTRCGVLDRSLRWVHSLCLHVQATCH 660
           +SHS  +  RC     + ++ HSL LH++   H
Sbjct: 37  KSHSNVYQYRCANCTYATKYCHSLKLHLRKYSH 69


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 537 FWPPPSRLDAKVTLSWNTLWCTGSEPALGPFSLSTCTSYL 656
           FW  P    A+VTL   +L    ++ A    SL    SYL
Sbjct: 266 FWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPP-VSYL 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,692
Number of Sequences: 438
Number of extensions: 4208
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)