Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1405
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.1  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   9.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 166  QSQRKAWQPPQPTSPNHVL 110
            QS + +WQPP  T  N ++
Sbjct: 1126 QSLQVSWQPPPNTHSNGII 1144


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 166  QSQRKAWQPPQPTSPNHVL 110
            QS + +WQPP  T  N ++
Sbjct: 1122 QSLQVSWQPPPNTHSNGII 1140


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 210 HVQEHNAHMTLGSEGSPKERH 148
           HV   N H  LG  G   ERH
Sbjct: 280 HVHHANHHAILGHSGFLCERH 300


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 5  LSFEKRFLFEFYVTMAE 55
          LS EK+F  + Y+T+AE
Sbjct: 22 LSLEKKFREKQYLTIAE 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,891
Number of Sequences: 438
Number of extensions: 2823
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)