Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1404
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +2

Query: 164 NILYLL*IMAPVIHLWILLMLDIPFLKQNNIGSLHICKT 280
           NI Y++ +   + +L + L +D+P+    N  +   C T
Sbjct: 112 NIYYIIILAWALFYLLVSLRIDLPWRTCGNPWNTRYCLT 150


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +2

Query: 164 NILYLL*IMAPVIHLWILLMLDIPFLKQNNIGSLHICKT 280
           NI Y++ +   + +L + L +D+P+    N  +   C T
Sbjct: 165 NIYYIIILAWALFYLLVSLRIDLPWRTCGNPWNTRYCLT 203


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 172 IFTLNNGSCDSLMDTPNARYS 234
           + TL+  S DS  D P  RY+
Sbjct: 284 VLTLSTISLDSRTDLPKVRYA 304


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 343 IYNINLLLFVT*YWLYY 393
           I+ ++ +LF   YW++Y
Sbjct: 471 IFPVSFMLFNAIYWIFY 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,908
Number of Sequences: 438
Number of extensions: 3989
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)