Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1401
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    36   3e-04
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    36   3e-04
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   8.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.4  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +1

Query: 379 YCPSVDQKS-----CKAGCVCKEGYLKDDSGKCVARENC 480
           +CP+V  K      C  GCVC+ GYL++    CV R  C
Sbjct: 53  FCPNVVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 33.1 bits (72), Expect = 0.003
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 505 NEEFTNCTNPCPPRTCNSLVARFDCSKPKPCEEGCACKPDYLKLDDNSACVKICEC 672
           NE F+ C   C  R C ++V +  C K   C  GC C+  YL+ +    CV   +C
Sbjct: 40  NEIFSRCDGRCQ-RFCPNVVPKPLCIKI--CAPGCVCRLGYLR-NKKKVCVPRSKC 91



 Score = 31.5 bits (68), Expect = 0.008
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 211 CVGGCVCKDNYFRAKNDTCIKLSDC 285
           C  GCVC+  Y R K   C+  S C
Sbjct: 67  CAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 28.3 bits (60), Expect = 0.073
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 16  CEVGCVCKRGFRRADNGTCVDERDC 90
           C  GCVC+ G+ R     CV    C
Sbjct: 67  CAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +1

Query: 379 YCPSVDQKS-----CKAGCVCKEGYLKDDSGKCVARENC 480
           +CP+V  K      C  GCVC+ GYL++    CV R  C
Sbjct: 53  FCPNVVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 33.1 bits (72), Expect = 0.003
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 505 NEEFTNCTNPCPPRTCNSLVARFDCSKPKPCEEGCACKPDYLKLDDNSACVKICEC 672
           NE F+ C   C  R C ++V +  C K   C  GC C+  YL+ +    CV   +C
Sbjct: 40  NEIFSRCDGRCQ-RFCPNVVPKPLCIKI--CAPGCVCRLGYLR-NKKKVCVPRSKC 91



 Score = 31.5 bits (68), Expect = 0.008
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 211 CVGGCVCKDNYFRAKNDTCIKLSDC 285
           C  GCVC+  Y R K   C+  S C
Sbjct: 67  CAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 28.3 bits (60), Expect = 0.073
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 16  CEVGCVCKRGFRRADNGTCVDERDC 90
           C  GCVC+ G+ R     CV    C
Sbjct: 67  CAPGCVCRLGYLRNKKKVCVPRSKC 91


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 322 NCVLAQCGPMTCSEKDGPMYCPSVDQKSCKAGCVCKEGYLKD 447
           N V+ +     C + DG  Y PS        GC CK GY  D
Sbjct: 223 NAVVIEQPTFLC-KGDGKWYLPS-------GGCHCKPGYQAD 256



 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 604 GCACKPDYLKLDDNSACVKICECP 675
           GC CKP Y    +   C    ECP
Sbjct: 246 GCHCKPGYQADVEKQECT---ECP 266



 Score = 22.6 bits (46), Expect = 3.6
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
 Frame = +1

Query: 145 CRVEKCSDLGGSLSCKGV---SERECVG--GCVCKDNYFRAKNDTCIKLSDCDADLCSEN 309
           C + K     GS SC+     S+    G   C C   YFRA+ D   K   C     +  
Sbjct: 265 CPIGKFKHEAGSHSCEACPAHSKSSDYGFTECRCDPGYFRAEKDP--KKMPCTQPPSAPQ 322

Query: 310 EIHVNCV 330
            + VN V
Sbjct: 323 NLTVNFV 329


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 421 VCKEGYLKDDSGKCVARENCPN*ECSGENEEFTNCTNPCPP 543
           +C EG ++    KC+         CS E  E +  +NPC P
Sbjct: 78  ICAEG-MQCSCNKCIG--------CSAEKFECSKTSNPCLP 109


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 478 NFLGRHIYRYRLLDIPLYTRIRLCRTFGPPMGS 380
           N  GRH+  +  +  P YT   +  T  P  GS
Sbjct: 208 NGYGRHLPGHAQMGRPSYTTATMATTSTPGSGS 240


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 139 LGCNLNTVHLLNKAGIHNLFHRHRCHCQPYEILFYKHNRLRR 14
           LG   NT+H++       +F  +    + Y+ L   +NRL R
Sbjct: 9   LGVLFNTLHIIYSVAGLKIFEANPDTKRLYDDLLSNYNRLIR 50


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 377 IGPSFSEHVIGPHCARTQFTCISFS 303
           I PS  +  +GP CA   F  +SF+
Sbjct: 105 IDPSLEDEFMGPKCAAFLFQ-LSFA 128


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 398 WSTDGQYIGPSFSEHV 351
           W  DG+ +GPS   HV
Sbjct: 645 WLKDGRAMGPSERVHV 660


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,738
Number of Sequences: 438
Number of extensions: 5319
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)