Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1400
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.5  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   6.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 193 NMHIQIRSTTNKRNIFLHVCSRRFC 267
           N+ + I ST+NK  + L    R FC
Sbjct: 113 NITLNIESTSNKMTVILTPPGRFFC 137


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 298 YIKIRIHKMFFFFFEIVSKILFCINSLVFIFM 393
           Y  IR+HK      +I S+I F I  ++FI +
Sbjct: 349 YPMIRVHKTQSQTIDIYSRIGFPILFMLFIIL 380


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 184 LKVNMHIQIRSTTNKRNI 237
           +K+   I I STT KRN+
Sbjct: 168 VKIPHDIAINSTTGKRNV 185


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 384 YLYAVIDLVIFSKNVICSYIYFYH 455
           Y   + + V  S+N + ++IY YH
Sbjct: 36  YRCVICERVYCSRNSLMTHIYTYH 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,902
Number of Sequences: 438
Number of extensions: 2976
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)