Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1390
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    25   0.44 
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    25   0.44 
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   5.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   5.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   5.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   5.5  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -2

Query: 71  HLALSSVPPLMTGAI-VQLRHY 9
           HLA+   PPL++GA+ +  RH+
Sbjct: 133 HLAMHDYPPLVSGALHLLFRHF 154


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -2

Query: 71  HLALSSVPPLMTGAI-VQLRHY 9
           HLA+   PPL++GA+ +  RH+
Sbjct: 101 HLAMHDYPPLVSGALHLLFRHF 122


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 113 LRASVRTDSGVSAAQLTYGKNIRLPGD 193
           L ++V    GV +  LTY KNI LP +
Sbjct: 32  LDSNVEVVVGVPSIYLTYAKNI-LPNN 57


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 245 NKIQKIIKSFRPVREN 292
           N+ QKI +S +  REN
Sbjct: 316 NRFQKIAESMKTAREN 331


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 245 NKIQKIIKSFRPVREN 292
           N+ QKI +S +  REN
Sbjct: 316 NRFQKIAESMKTAREN 331


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 269 SFRPVRENQTSRSIFVHPDLHKCSFVFVRDDAVHKSLKPP 388
           SFR  R+  T +        HK  F+ V    VH + K P
Sbjct: 269 SFRDFRDRTTEQQ-------HKAMFLVVTAQPVHSAYKAP 301


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 245 NKIQKIIKSFRPVREN 292
           N+ QKI +S +  REN
Sbjct: 255 NRFQKIAESMKTAREN 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,030
Number of Sequences: 438
Number of extensions: 2495
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)