Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1389
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    27   0.091
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    27   0.16 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.37 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.85 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   1.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.9  

>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 27.5 bits (58), Expect = 0.091
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -2

Query: 180 WKGLDG--IGDDRDLSLLGGK*VLITGISVWTGSSQVPSNVFVVRLTVSIFSIL 25
           W G+ G  IG    +S++G   V+   +S  T S + PSN+FV+ L +S F ++
Sbjct: 17  WHGILGFVIGMLGFVSVMGNGMVVYIFLS--TKSLRTPSNLFVINLAISDFLMM 68


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -2

Query: 180 WKGLDG--IGDDRDLSLLGGK*VLITGISVWTGSSQVPSNVFVVRLTVSIFSIL 25
           W G+ G  IG    +S +G   V+   +S  T S + PSN+FV+ L +S F ++
Sbjct: 51  WHGILGFVIGMLGFVSAMGNGMVVYIFLS--TKSLRTPSNLFVINLAISNFLMM 102


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 144 LSLLGGK*VLITGISVWTGSSQVPSNVFVVRLTVSIFSILLPRAEFL 4
           L+LLG    L+  I     S + PSN+FVV L +  F +++    F+
Sbjct: 61  LALLGNG--LVIWIFCAAKSLRTPSNMFVVNLAICDFFMMIKTPIFI 105


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 12/50 (24%), Positives = 21/50 (42%)
 Frame = +2

Query: 266 EIYHNQNNEQQRQWSQEPQSEVLTISNVKPSSITNQQWYQQIRENSVYND 415
           +++H+Q+   Q Q   +PQ +              QQ  QQ +   + ND
Sbjct: 813 QLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRGPMTND 862



 Score = 24.2 bits (50), Expect = 0.85
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 254  QMPSEIYHNQNNEQQRQWSQEPQSE 328
            Q P +    Q  +Q +Q SQ+PQ +
Sbjct: 1503 QQPQQQQQQQQQQQPQQQSQQPQQQ 1527



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 290  EQQRQWSQEPQSEVLTISNVKPSSITNQQWYQQ 388
            +QQ+Q  Q+PQ +       +P     QQ  QQ
Sbjct: 1508 QQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQ 1540



 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 254  QMPSEIYHNQNNEQQRQWSQEPQSE 328
            Q P +       +QQ+Q  Q+PQ +
Sbjct: 1522 QQPQQQQPQPQQQQQQQQQQQPQQQ 1546



 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/50 (22%), Positives = 21/50 (42%)
 Frame = +2

Query: 254 QMPSEIYHNQNNEQQRQWSQEPQSEVLTISNVKPSSITNQQWYQQIRENS 403
           Q  ++    Q  +QQ+Q  Q+ Q +       +   +TN  +   I E +
Sbjct: 823 QAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRGPMTNDDFNPNIEEEA 872


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 81  VKILSKQKYRLLKPIFPPTGTDLCHLQCR 167
           + +L+ Q+ R  +P+ PP   + C L C+
Sbjct: 324 IVLLNFQEERRSEPVEPPRRKNNCPLHCK 352


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 294 NSDNGHKNHN 323
           N DN H NHN
Sbjct: 419 NQDNNHYNHN 428


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 144 LSLLGGK*VLITGISVW 94
           LSLLGG  V++    VW
Sbjct: 537 LSLLGGPLVMVCSAPVW 553


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 254 QMPSEIYHNQNNEQQRQWSQEPQSE 328
           Q P +    Q  +QQ+Q  Q+ Q +
Sbjct: 438 QQPQQQQQQQQQQQQQQQQQQQQQQ 462


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 120 VLITGISVWTGSSQVPSNV 64
           V+++ +S W   S VP+ V
Sbjct: 256 VIVSWVSFWLDQSAVPARV 274


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 120 VLITGISVWTGSSQVPSNV 64
           V+++ +S W   S VP+ V
Sbjct: 256 VIVSWVSFWLDQSAVPARV 274


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 90  GSSQVPSNVFVVRLTVSIFSILLP 19
           GS+ +PS +  +RL+  +   LLP
Sbjct: 344 GSAGLPSAILAMRLSHPLHGNLLP 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,762
Number of Sequences: 438
Number of extensions: 3707
Number of successful extensions: 20
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)