Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1376
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   6.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   6.6  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   8.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 540 TLIHVPIKLQHNSALCSVIGKLPLITRFGILPVL 641
           T+I  P  ++    LC  +G     TRF ILP++
Sbjct: 202 TIIGDPANIEFTE-LCMKLGWKSARTRFDILPLI 234


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 222 ERYSVVVFQFSTRAHYAA*CSTLNV-ATTATLRTI 323
           + Y ++V++FS   HY    +T  + A T  L T+
Sbjct: 237 DTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTL 271


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 382 KKKSVSIARITREQYF 335
           K+K V +AR+ R  YF
Sbjct: 380 KEKHVEVARLIRNYYF 395


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 382 KKKSVSIARITREQYF 335
           K+K V +AR+ R  YF
Sbjct: 380 KEKHVEVARLIRNYYF 395


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 241 FSNSAQERTMRHNAQR*MLQLQQRF 315
           F  S +ER  +H   +  L  +QRF
Sbjct: 96  FIKSLEERERKHAVHKEQLSREQRF 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,346
Number of Sequences: 438
Number of extensions: 3708
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)