Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1374
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.44 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   1.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   1.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   3.1  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.5  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 447 SKKCHVSQ*YLSNNIYQNFNG*HFNQCSNYSFIIYKCL 334
           +K  H +  Y +NN   N+N  + N  +NY  + Y  +
Sbjct: 320 NKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYYNII 357


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 572 FDFS*KNVHPYQFYYI 525
           F  S KN+ PY  YYI
Sbjct: 132 FQLSLKNIEPYNNYYI 147


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 572 FDFS*KNVHPYQFYYI 525
           F  S KN+ PY  YYI
Sbjct: 132 FQLSLKNIEPYNNYYI 147


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 551 VHPYQFYYINKHLTNT 504
           V  + F Y+NKH TN+
Sbjct: 199 VGAFGFLYLNKHFTNS 214


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 551 VHPYQFYYINKHLTNT 504
           V  + F Y+NKH TN+
Sbjct: 199 VGAFGFLYLNKHFTNS 214


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 411 NNIYQNFNG*HFNQCSNYSFIIY 343
           NN Y N+N  + N  +NY  + Y
Sbjct: 331 NNNYNNYNNYNNNYNNNYKKLYY 353


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 222 VNIPLVSRLP*FRPYTNRLTLLAKVLVT 139
           + IP   +LP   P+T  +T L + L +
Sbjct: 93  ITIPPTRKLPPLHPHTAMVTHLPQTLTS 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,832
Number of Sequences: 438
Number of extensions: 2616
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)