Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1373
         (396 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   6.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.8  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 244 RVQQCSDCVSFDEF 203
           RVQ  +D  +FDE+
Sbjct: 646 RVQNATDTTNFDEY 659


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 334 MSFSLISSTFGLPFT 290
           MS +  S+TFG+P T
Sbjct: 428 MSLTKASATFGIPST 442


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 156 ADIYGLDCCPVDIQIS 203
           AD+   +C P+++Q S
Sbjct: 689 ADLSSYNCVPINVQFS 704


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,984
Number of Sequences: 438
Number of extensions: 1745
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)