Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1361
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    27   0.15 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.15 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   10.0 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   10.0 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   10.0 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   10.0 

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 260 EWPFDIRRRTRLFVRTPCFI 201
           EWP  +R+R  LF+   CF+
Sbjct: 406 EWPRLLRKRKELFIAIVCFV 425


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 260 EWPFDIRRRTRLFVRTPCFI 201
           EWP  +R+R  LF+   CF+
Sbjct: 459 EWPRLLRKRKELFIAIVCFV 478


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 85  FVSFTNKRMGAEVEADQLGDEWKGYV 162
           F++    R+G  +++D L +  +GYV
Sbjct: 220 FIAVLYIRIGLRIQSDSLAENVEGYV 245


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 416  VPNVLPKSVSCSTLAKKMMYV 478
            VP++ P+ V C+ L  + + V
Sbjct: 1110 VPSIPPEDVRCAALTSQSLQV 1130


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 416  VPNVLPKSVSCSTLAKKMMYV 478
            VP++ P+ V C+ L  + + V
Sbjct: 1106 VPSIPPEDVRCAALTSQSLQV 1126


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 341 WLLLLCARVPR 373
           WLL LC  VP+
Sbjct: 179 WLLALCLAVPQ 189


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 64  SNNFWHPVAGYETFN 20
           +NN ++P   Y TFN
Sbjct: 222 TNNLFYPYPPYGTFN 236


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -1

Query: 392 SVNPGISWAPLRTITRAKTERLASTIHPRTDLR 294
           S+N    W P R +   + +   ST+  R + R
Sbjct: 567 SINTVAEWEPPRALWPTEWKVRPSTVEEREEFR 599


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 76  SSTTSNNFWHPVAGYETFNFMTAP 5
           S  T+N ++ P+A +  +   TAP
Sbjct: 257 SPVTNNLYYSPLASHGLYYVNTAP 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,350
Number of Sequences: 438
Number of extensions: 3302
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)