Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1343
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    27   0.071
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.66 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.66 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.5  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   4.7  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   4.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   8.2  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 0.071
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 255 KLDKSQIHDVVLVGGSTRIPKVQTMLQNFFCG 350
           K D+S  HD V++GGS  +   +  + +  CG
Sbjct: 253 KCDESSPHDQVIIGGSNGLDTSKVHIIDSICG 284


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 0.66
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 371 DG*VQFLPTEEVLEHSLYF 315
           DG    LPT E+L HSL F
Sbjct: 182 DGKFHLLPTGELLVHSLEF 200


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 0.66
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 371 DG*VQFLPTEEVLEHSLYF 315
           DG    LPT E+L HSL F
Sbjct: 182 DGKFHLLPTGELLVHSLEF 200


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 102 VPPPRSKIRTFLSPLRFLSKSSPPRCVPR 16
           VP P+    T LSP+R    SS P   P+
Sbjct: 796 VPVPQVNDSTILSPVREKLSSSQPMQPPQ 824


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
          preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 36 PPRCVPRAEFLQ 1
          PPRC P ++F++
Sbjct: 58 PPRCPPGSKFIK 69


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 36 PPRCVPRAEFLQ 1
          PPRC P ++F++
Sbjct: 58 PPRCPPGSKFIK 69


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 173 DSRVEVDALIQSVNXRWSGRTRRRFL 96
           D R E+D  I+++    + + R  FL
Sbjct: 657 DGRTEIDVAIKTLKPGSADKARNDFL 682


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,601
Number of Sequences: 438
Number of extensions: 2151
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)