Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1327
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...   318   2e-89
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    40   2e-05
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.4  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score =  318 bits (782), Expect = 2e-89
 Identities = 155/222 (69%), Positives = 182/222 (81%)
 Frame = +2

Query: 23  MSECTVEILLETAMGVSKSTQDQSGFEYAMAVMKMCDILHLRHTKIWLRPDLLFKFTDYA 202
           MSE TV+ILLETAMGVSK T+D + FEYAMAVMKMCDILHLRHTKIWLRPD LF  T Y 
Sbjct: 182 MSELTVDILLETAMGVSKPTRDHNAFEYAMAVMKMCDILHLRHTKIWLRPDWLFNLTKYG 241

Query: 203 KNQTKLLDIIHGLTKKVIKRKKEEFASGKKPSNLNETATTSEPSTGKLTSVEGPSFGQSS 382
           KNQ KLL+IIHGLTKKVI+ KKEE+ SGK+ + ++ +A  +E  T  +  VEG SFGQS 
Sbjct: 242 KNQIKLLEIIHGLTKKVIQLKKEEYKSGKR-NIIDNSAQKTESKTNNIV-VEGVSFGQSV 299

Query: 383 GLKXXXXXXXXXGQKKRLAFLDLLLESSQSGVAISDEEIKEQVDTIMFEGHDTTAAGSSF 562
           GLK         G+KKR AFLDLL+E+ Q+GV ++D+E+KEQVDTIMFEGHDTTA+GSSF
Sbjct: 300 GLKDDLDIDDDVGEKKRQAFLDLLIEAGQNGVLLTDKEVKEQVDTIMFEGHDTTASGSSF 359

Query: 563 FLSMMGIHQDIQDKVIEELDQIFGDSDRPVTFQDTLEMKYLE 688
           FL++MG H DIQ+KVI+ELD+IFGDSDRP TFQDTLEMKYLE
Sbjct: 360 FLAVMGCHPDIQEKVIQELDEIFGDSDRPATFQDTLEMKYLE 401


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
 Frame = +2

Query: 440 FLDLLLESSQS-----GVAISDEEIKEQVDTIMFEGHDTTAAGSSFFLSMMGIHQDIQDK 604
           F+++L+E  ++      + ++D  I  Q       G +T++   S  L  + ++QD+Q K
Sbjct: 270 FINMLMELQKNPQKLENIKLTDSLIAAQAFVFFLAGFETSSTTMSNALYELALNQDVQKK 329

Query: 605 VIEELDQIFGDSDRPVTFQDTLEMKYLE 688
           + EE++     +++ + + D  EM+YL+
Sbjct: 330 LREEINTFCPKNNKELKYDDIKEMEYLD 357


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 363 GPSTEVNFPVDGSLVVAVSFKLDGFLPDANSSFFL 259
           GP+  +     G+    V++ LDGF    N  F +
Sbjct: 436 GPAVSLKCSAAGNPTPQVTWALDGFALPTNGRFMI 470


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 363 GPSTEVNFPVDGSLVVAVSFKLDGFLPDANSSFFL 259
           GP+  +     G+    V++ LDGF    N  F +
Sbjct: 436 GPAVSLKCSAAGNPTPQVTWALDGFALPTNGRFMI 470


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 494 PHRKWPHHFVNSPATDQG 441
           P+R  PH+ V   A  QG
Sbjct: 108 PYRPHPHNLVGKEACKQG 125


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 494 PHRKWPHHFVNSPATDQG 441
           P+R  PH+ V   A  QG
Sbjct: 108 PYRPHPHNLVGKEACKQG 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,789
Number of Sequences: 438
Number of extensions: 4321
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)