Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1313
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.2  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = +2

Query: 104 FFTLDLSNCSDQMPTHSHVEKCLASKWKSVP 196
           ++ LD  NC+ ++ ++ +    +   WK  P
Sbjct: 167 YYPLDSQNCTVEIESYGYTVLDVVMYWKETP 197


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 307 YYLLPSVQLDSGFSLKSTGNI 245
           +Y+ PS+Q D  F L  TG +
Sbjct: 173 FYIYPSLQGDGKFHLLPTGEL 193


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 307 YYLLPSVQLDSGFSLKSTGNI 245
           +Y+ PS+Q D  F L  TG +
Sbjct: 173 FYIYPSLQGDGKFHLLPTGEL 193


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 104 FFTLDLSNCSDQMPTHSHVEKCLASKWKSVPSANIGPLLSRVVS 235
           F TL+ S   D + T     +   ++W  +  ANIGP + ++++
Sbjct: 727 FSTLEGSG-GDSLRTLLQRGQETGAEWPGLEHANIGPYIQKMIA 769


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 221 LARDRCWLMGHSSICLQDISLHDYELAFDLNN 126
           L   R W    S   L+DI+    EL FD+ +
Sbjct: 278 LVASRTWPFRPSGTVLKDINRQVDELNFDIQD 309


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 604 NTLFINVIKIVILQFV 651
           NT+FIN++K +  ++V
Sbjct: 337 NTMFINILKFLKQKYV 352


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 534 KVPYKKCNLRKTKINAKFTSKIF 602
           K P +K + ++     KFTSK+F
Sbjct: 438 KKPRRKFHFKQIARAVKFTSKLF 460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,520
Number of Sequences: 438
Number of extensions: 3758
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)