Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1308
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    26   0.25 
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   1.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.2  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -1

Query: 392 TSFPLLNCFSSY*VHSILKCIRNGSFLFFSFVVFNYVH*FIH*FIVMLF 246
           TS PLL CF       I KC  N   +  S+V+F+ +  F    +VML+
Sbjct: 171 TSPPLLGCFPRATNRDIKKCSYN---MDSSYVIFSAMGSFFLPMLVMLY 216


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 562 YLVVSSIRNCI*PKKKLFIFWV 497
           YLV +  RNCI P     +FW+
Sbjct: 29  YLVRAFCRNCIHPTVFSVLFWL 50


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 562 YLVVSSIRNCI*PKKKLFIFWV 497
           YLV +  RNCI P     +FW+
Sbjct: 477 YLVRAFCRNCIHPTVFSVLFWL 498


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 498 TQKINNFFLG*MQFLIE 548
           T K+NN F+G  +FLI+
Sbjct: 90  TDKLNNPFIGMGEFLID 106


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 475 QLNIFVDCSVTYLLQFRCFSHLFLNIFQRL 386
           +L I + C V+YL+   C +   + +FQ L
Sbjct: 416 ELFIAIVCFVSYLIGLFCITEGGMYVFQLL 445


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 475 QLNIFVDCSVTYLLQFRCFSHLFLNIFQRL 386
           +L I + C V+YL+   C +   + +FQ L
Sbjct: 469 ELFIAIVCFVSYLIGLFCITEGGMYVFQLL 498


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 212 ACLDLLQIYSYTLVFQVIIVTY 147
           A LD+   Y+Y  + Q+ IV Y
Sbjct: 493 ALLDIFDTYTYDTICQLNIVHY 514


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 58  WLNHSSKYKQ 87
           WLNHS  Y Q
Sbjct: 661 WLNHSPNYDQ 670


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,880
Number of Sequences: 438
Number of extensions: 3085
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)