Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1306
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   1.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   3.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   4.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   4.1  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 135 NYYMFNLSLRDTRWTVI 85
           NYY+FNL++ D  + ++
Sbjct: 69  NYYLFNLAVSDLLFLIL 85


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +3

Query: 351 IHPNTPRVSAIASSFR 398
           IHP  PR+ ++ ++++
Sbjct: 160 IHPGDPRIKSVVTAYK 175


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 185 EIRHWNGVTSKIYRLTAWLICGVVPF 262
           E+RH   V +K Y     L  G+V F
Sbjct: 395 ELRHSRPVPAKKYDCVTLLFSGIVGF 420


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 185 EIRHWNGVTSKIYRLTAWLICGVVPF 262
           E+RH   V +K Y     L  G+V F
Sbjct: 395 ELRHSRPVPAKKYDCVTLLFSGIVGF 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,711
Number of Sequences: 438
Number of extensions: 2019
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)