Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1298
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    25   0.52 
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    25   0.52 
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    25   0.52 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.69 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.1  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    22   6.4  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    22   6.4  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    22   6.4  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   6.4  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    22   6.4  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    22   6.4  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    22   6.4  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +3

Query: 204 KKQNHFLKKDIPRIYLETNIIGSKGSIERTKSKLDKLFALRTVLRKFYEFNDIRNEFKNL 383
           ++QN +  +   R Y ET+   S+   ER KSK  K+    + L   Y +N+  N +K L
Sbjct: 45  REQNSYKNEREYRKYRETSKERSRDRKEREKSKEHKII---SSLSNNYNYNN--NNYKKL 99

Query: 384 F 386
           +
Sbjct: 100 Y 100


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +3

Query: 204 KKQNHFLKKDIPRIYLETNIIGSKGSIERTKSKLDKLFALRTVLRKFYEFNDIRNEFKNL 383
           ++QN +  +   R Y ET+   S+   ER KSK  K+    + L   Y +N+  N +K L
Sbjct: 45  REQNSYKNEREYRKYRETSKERSRDRKEREKSKEHKII---SSLSNNYNYNN--NNYKKL 99

Query: 384 F 386
           +
Sbjct: 100 Y 100


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +3

Query: 204 KKQNHFLKKDIPRIYLETNIIGSKGSIERTKSKLDKLFALRTVLRKFYEFNDIRNEFKNL 383
           ++QN +  +   R Y ET+   S+   ER KSK  K+    + L   Y +N+  N +K L
Sbjct: 45  REQNSYKNEREYRKYRETSKERSRDRKEREKSKEHKII---SSLSNNYNYNN--NNYKKL 99

Query: 384 F 386
           +
Sbjct: 100 Y 100


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 218 MILFLQPFLQNIDGLIHFSFIVTVQHLYLLRR--AFGNF 108
           ++ FLQPF   +  L+  S  V    LYLL R   FG F
Sbjct: 557 LVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRF 595


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 84  NTFRYGFKSKRKLNNTNVNQ 25
           N ++Y + +K   NN N N+
Sbjct: 94  NNYKYNYNNKYNYNNNNYNK 113


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 170 E*GRRYFGGMAEETESFPEERYSKNILGDEYNRKQRFYR 286
           E  RRY   +  E E   EER S+N       R+Q  Y+
Sbjct: 14  EKNRRY-EKLHNEKEKLLEERTSRNRYSRSREREQNSYK 51


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 170 E*GRRYFGGMAEETESFPEERYSKNILGDEYNRKQRFYR 286
           E  RRY   +  E E   EER S+N       R+Q  Y+
Sbjct: 14  EKNRRY-EKLHNEKEKLLEERTSRNRYSRSREREQNSYK 51


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 170 E*GRRYFGGMAEETESFPEERYSKNILGDEYNRKQRFYR 286
           E  RRY   +  E E   EER S+N       R+Q  Y+
Sbjct: 14  EKNRRY-EKLHNEKEKLLEERTSRNRYSRSREREQNSYK 51


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 170 E*GRRYFGGMAEETESFPEERYSKNILGDEYNRKQRFYR 286
           E  RRY   +  E E   EER S+N       R+Q  Y+
Sbjct: 14  EKNRRY-EKLHNEKEKLLEERTSRNRYSRSREREQNSYK 51


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 170 E*GRRYFGGMAEETESFPEERYSKNILGDEYNRKQRFYR 286
           E  RRY   +  E E   EER S+N       R+Q  Y+
Sbjct: 14  EKNRRY-EKLHNEKEKLLEERTSRNRYSRSREREQNSYK 51


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 170 E*GRRYFGGMAEETESFPEERYSKNILGDEYNRKQRFYR 286
           E  RRY   +  E E   EER S+N       R+Q  Y+
Sbjct: 14  EKNRRY-EKLHNEKEKLLEERTSRNRYSRSREREQNSYK 51


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 170 E*GRRYFGGMAEETESFPEERYSKNILGDEYNRKQRFYR 286
           E  RRY   +  E E   EER S+N       R+Q  Y+
Sbjct: 14  EKNRRY-EKLHNEKEKLLEERTSRNRYSRSREREQNSYK 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,123
Number of Sequences: 438
Number of extensions: 4199
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)