Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1293
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              27   0.17 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   3.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   3.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   3.6  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 126 TRCAQCCPGRHGGHSQSYFKFYILKRADG 212
           T C  C   R+ G  ++Y++ ++LK ADG
Sbjct: 38  TECVFC---RNNGEEEAYYRKHLLKDADG 63


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 439 IGSPRSAPLEIDSQVS 392
           +GSPR +P+E + ++S
Sbjct: 288 VGSPRDSPIEPEIEIS 303


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 97  ENYSHIYKRLPGVHNVVPDD 156
           +N+ +I + LPG   ++PDD
Sbjct: 411 QNFYYIEEYLPGNGVIIPDD 430


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 532 QSFFHGQSVASWEKLCPGTRH*HEYIGLLARIGSPR 425
           Q+  H  +  +  +LCP  R  H  +  + R+GS R
Sbjct: 367 QTSVHYSNGQTHSQLCPTPRSTHLKVSGINRVGSTR 402


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 131 VCTMLSRTTRGSLSVVFQVLYS*KS 205
           V TM+++  R    V+F++LYS K+
Sbjct: 94  VFTMMNKEMRHQAVVLFRLLYSAKT 118


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 37  LSSSKQTAVS*RRHREKAFFENYSHIYKRLP 129
           LSS ++ AVS R  R++   +N  H ++ LP
Sbjct: 279 LSSRREFAVSTRILRDENLSQNSYHEFQILP 309


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 131 VCTMLSRTTRGSLSVVFQVLYS*KS 205
           V TM+++  R    V+F++LYS K+
Sbjct: 94  VFTMMNKEMRHQAVVLFRLLYSAKT 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,512
Number of Sequences: 438
Number of extensions: 3485
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)