Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1279
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.53 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 380 PIRKFHFKKMARNGKM*RVTEKCDGKFFSNADKEVSL 490
           P RKFHFK++AR  K    T K  G+  S   K   L
Sbjct: 440 PRRKFHFKQIARAVKF---TSKLFGRALSRRIKATVL 473


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -3

Query: 513 TLSNLTF*SETSLSAL--EKNLPSHFSVTRHIFPLRAIF 403
           T  N  F ++ SL+    EK+LP   SV   IFP   +F
Sbjct: 181 TFDNRAF-TQASLAMTREEKHLPIGASVLFEIFPFCIVF 218



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 616 EKNLPSHFSVTRHIFPLRAIFFVFMSMIIKS 524
           EK+LP   SV   IFP   +F     MI++S
Sbjct: 198 EKHLPIGASVLFEIFPFCIVF--GSDMIVRS 226



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 374 EKNLPSHFSVTRHIFPLRAIFFVFMSMIIKS 282
           EK+LP   SV   IFP   +F     MI++S
Sbjct: 198 EKHLPIGASVLFEIFPFCIVF--GSDMIVRS 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,685
Number of Sequences: 438
Number of extensions: 3277
Number of successful extensions: 28
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)