Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1274
(646 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY217747-1|AAP45005.1| 246|Apis mellifera short-chain dehydroge... 48 6e-08
AB013287-1|BAA87893.1| 190|Apis mellifera calmodulin kinase II ... 26 0.36
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 1.9
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 1.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.5
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.5
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.5
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.5
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.5
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.5
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.5
>AY217747-1|AAP45005.1| 246|Apis mellifera short-chain
dehydrogenase/reductase protein.
Length = 246
Score = 48.4 bits (110), Expect = 6e-08
Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
Frame = +1
Query: 91 IVTGAARGIGYAIADNFLANGVNQIIILDRNVTNGVRAAETLKCKYGRDKVIFILCDVTK 270
+VTGA GIG + + + G+ ++I + V E LK K G K++ + CD++
Sbjct: 11 LVTGANSGIGKCLIECLVGKGM-KVIGIAPQVDKMKTLVEELKSKPG--KLVPLQCDLSN 67
Query: 271 DRHLWGDI--VDEH-GPIHVLVNYAGI-----LEEDQPREMILTNSVAPIEWSLKFREYA 426
+ I V+++ G I +L+N A I L+ D+ + + + + +E
Sbjct: 68 QNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMIQEVL 127
Query: 427 R--NDKGGPGGTIVNIASISGYTIFPF---MVSYVSSKHASLAFSKSLGHPYNFKKTGIR 591
+ KG G IVNI SG + P +Y++SK A + L ++ I+
Sbjct: 128 KLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSELAQCESNIK 187
Query: 592 IVALCPGLTYTAMTAK 639
++++ P L T MTA+
Sbjct: 188 VISISPDLVETDMTAQ 203
>AB013287-1|BAA87893.1| 190|Apis mellifera calmodulin kinase II
protein.
Length = 190
Score = 25.8 bits (54), Expect = 0.36
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 52 NSISDKDLKGKNVIVTGAARGIGYAIADNFLA 147
N + +DLK +N+++ A+G +AD LA
Sbjct: 28 NGVVHRDLKPENLLLASKAKGAAVKLADFGLA 59
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 23.4 bits (48), Expect = 1.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 92 ITFLPFRSLSLIELALTESIT 30
+TFLP RSL ++ L+ +T
Sbjct: 884 LTFLPLRSLEILRLSGNRLVT 904
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.4 bits (48), Expect = 1.9
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +1
Query: 340 ILEEDQPREMILTNSVAPIEWSLKFREYARNDKGG 444
I++ D+ ++++TN +EW+ + +D GG
Sbjct: 60 IIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGG 94
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.5
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 292 IVDEHGPIHVL--VNYAGILEEDQPREMILTNSVAPIEWSLKFREYARNDKGG 444
+ +E P+ V + I++ D+ +++ TN+ +EW ++ ++ GG
Sbjct: 5 VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGG 57
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.5
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 292 IVDEHGPIHVL--VNYAGILEEDQPREMILTNSVAPIEWSLKFREYARNDKGG 444
+ +E P+ V + I++ D+ +++ TN+ +EW ++ ++ GG
Sbjct: 5 VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGG 57
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.5
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 292 IVDEHGPIHVL--VNYAGILEEDQPREMILTNSVAPIEWSLKFREYARNDKGG 444
+ +E P+ V + I++ D+ +++ TN+ +EW ++ ++ GG
Sbjct: 5 VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGG 57
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.5
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 292 IVDEHGPIHVL--VNYAGILEEDQPREMILTNSVAPIEWSLKFREYARNDKGG 444
+ +E P+ V + I++ D+ +++ TN+ +EW ++ ++ GG
Sbjct: 5 VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGG 57
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.5
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 292 IVDEHGPIHVL--VNYAGILEEDQPREMILTNSVAPIEWSLKFREYARNDKGG 444
+ +E P+ V + I++ D+ +++ TN+ +EW ++ ++ GG
Sbjct: 5 VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGG 57
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.5
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 292 IVDEHGPIHVL--VNYAGILEEDQPREMILTNSVAPIEWSLKFREYARNDKGG 444
+ +E P+ V + I++ D+ +++ TN+ +EW ++ ++ GG
Sbjct: 5 VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGG 57
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.5
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 292 IVDEHGPIHVL--VNYAGILEEDQPREMILTNSVAPIEWSLKFREYARNDKGG 444
+ +E P+ V + I++ D+ +++ TN+ +EW ++ ++ GG
Sbjct: 73 VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGG 125
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.5
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 292 IVDEHGPIHVL--VNYAGILEEDQPREMILTNSVAPIEWSLKFREYARNDKGG 444
+ +E P+ V + I++ D+ +++ TN+ +EW ++ ++ GG
Sbjct: 73 VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGG 125
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,854
Number of Sequences: 438
Number of extensions: 3817
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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