Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1261
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   184   2e-49
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   183   5e-49
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    66   9e-14
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    33   8e-04
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.21 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.50 
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   4.6  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   4.6  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   4.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    20   8.1  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  184 bits (449), Expect = 2e-49
 Identities = 85/86 (98%), Positives = 85/86 (98%)
 Frame = +3

Query: 111 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 290
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 291 DKLKAERERGITIDIALWKFETSKYY 368
           DKLKAERERGITIDIALWKFETSKYY
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYY 86


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  183 bits (446), Expect = 5e-49
 Identities = 84/86 (97%), Positives = 85/86 (98%)
 Frame = +3

Query: 111 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 290
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 291 DKLKAERERGITIDIALWKFETSKYY 368
           DKLKAERERGITIDIALWKFET+KYY
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYY 86


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 66.5 bits (155), Expect = 9e-14
 Identities = 29/29 (100%), Positives = 29/29 (100%)
 Frame = +3

Query: 282 WVLDKLKAERERGITIDIALWKFETSKYY 368
           WVLDKLKAERERGITIDIALWKFETSKYY
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYY 29


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 33.5 bits (73), Expect = 8e-04
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 330 DIALWKFETSKYY 368
           DIALWKFETSKYY
Sbjct: 1   DIALWKFETSKYY 13


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 123 KTHINIVVIGHVDSGKST 176
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 132 INIVVIGHVDSGKST 176
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 213 DKRTIEKFEKEAQEMG 260
           DK+   KFE+EA+++G
Sbjct: 112 DKKYRVKFEEEAKKLG 127


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 213 DKRTIEKFEKEAQEMG 260
           DK+   KFE+EA+++G
Sbjct: 112 DKKFRVKFEEEAKKLG 127


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 213 DKRTIEKFEKEAQEMG 260
           DK+   KFE+EA+++G
Sbjct: 112 DKKYRVKFEEEAKKLG 127


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 313 SRSAFSLSNTQAYLKDPLPISWASFSN 233
           +RS F L N    +KD L   ++ F+N
Sbjct: 78  TRSPFLLLNDPELIKDILIRDFSKFAN 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,428
Number of Sequences: 438
Number of extensions: 1994
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)