Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1260
         (316 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    30   0.008
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   2.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   3.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   6.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   6.2  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 29.9 bits (64), Expect = 0.008
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = -3

Query: 224 PFLSCTKKIYYFVDKRPLYTFTCIDRHNTILIIFNIYGENAIALFLVYLYYFIAVVYKYN 45
           PF       +YF D +PL+   C D     +I+    G  ++  FL+ +  +I ++    
Sbjct: 27  PFCGPNVIDHYFRDLQPLFKLACTDTFMEGVIVLAFSGLFSVFSFLILVSSYIVILVNLR 86

Query: 44  N 42
           N
Sbjct: 87  N 87


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 170 YTFTCIDR-HNTILIIFNIYGENAIALFLVYLYYFIAVVYKYNNL 39
           YT  C++   +T+ +   ++G  AIA+ +V L   I  +   N++
Sbjct: 178 YTNGCVEALKDTVKLAGTVFGSVAIAIAIVELIGIICALCLANSI 222


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 4/9 (44%), Positives = 9/9 (100%)
 Frame = -3

Query: 275 LCFWLLYIT 249
           +C+W++Y+T
Sbjct: 485 ICYWVIYVT 493


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 196 YIFLVHDKKGPFESGVYKVM*SNQKHKQVSQINK 297
           Y F    +KGP   G   V+ +N      +QIN+
Sbjct: 285 YAFHFEGEKGPNSQGPSSVIDTNTGVDYFTQINR 318


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 278 CLCFWLLYITLYTPDSN 228
           CL    +YI L+ PD N
Sbjct: 754 CLYSPKIYIILFQPDKN 770


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 278 CLCFWLLYITLYTPDSN 228
           CL    +YI L+ PD N
Sbjct: 844 CLYSPKIYIILFQPDKN 860


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,553
Number of Sequences: 438
Number of extensions: 1984
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)