Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1259
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.4  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   6.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.0  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   7.9  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   7.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 447 STHVFNCM*VYCMLFNKRTYYVSH*YI 367
           ST  F C+ V  +L  +  YY+ H YI
Sbjct: 227 STGNFTCLEVVFVLKRRLGYYLFHTYI 253


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 388 LCISLIYILNLCI 350
           LCISL+YI+ L I
Sbjct: 403 LCISLVYIIMLII 415


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 476 WIIIGNSEKRII 511
           W+I+G+SE+R I
Sbjct: 89  WVILGHSERRNI 100


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 119 STVTAHNAQSTQPETQDLYEEPLVKINAL 205
           S +  H A +  P+ + LY++ L   N L
Sbjct: 15  SALVVHGAVAGNPDAKRLYDDLLSNYNKL 43


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 119 STVTAHNAQSTQPETQDLYEEPLVKINAL 205
           S +  H A +  P+ + LY++ L   N L
Sbjct: 15  SALVVHGAVAGNPDAKRLYDDLLSNYNKL 43


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 171 KSCVSGCVD*ALCAVTVEYIDIA 103
           + CVS   D   C V  +YID A
Sbjct: 97  EQCVSKAADEDECMVARKYIDCA 119


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 171 KSCVSGCVD*ALCAVTVEYIDIA 103
           + CVS   D   C V  +YID A
Sbjct: 97  EQCVSKAADEDECMVARKYIDCA 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,678
Number of Sequences: 438
Number of extensions: 3303
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)