Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1248
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   1.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.8  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 593 IHTFFICWAWYY 628
           I  FFICW  YY
Sbjct: 266 IAVFFICWTPYY 277


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 599 TFFICWAWYY 628
           TFFICWA ++
Sbjct: 268 TFFICWAPFH 277


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 116 YNITMPAKAVCVLRGDVSGTVFFDQQD 196
           YN+ +P K++   + DV+     D  D
Sbjct: 104 YNVAVPTKSILEKKPDVTTVELVDATD 130


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 569 VIGLAKI*IHTFFICWAWYY 628
           VI +    +  FFICWA ++
Sbjct: 268 VIKMLSAVVILFFICWAPFH 287


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/24 (33%), Positives = 9/24 (37%)
 Frame = -2

Query: 276 PNSCTWKPCLPLVKPWTSPETTTG 205
           P     KPC    +PW    T  G
Sbjct: 293 PIDANTKPCTWAARPWQGYMTNNG 316


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/24 (33%), Positives = 9/24 (37%)
 Frame = -2

Query: 276 PNSCTWKPCLPLVKPWTSPETTTG 205
           P     KPC    +PW    T  G
Sbjct: 293 PIDANTKPCTWAARPWQGYMTNNG 316


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/24 (33%), Positives = 9/24 (37%)
 Frame = -2

Query: 276 PNSCTWKPCLPLVKPWTSPETTTG 205
           P     KPC    +PW    T  G
Sbjct: 293 PIDANTKPCTWAARPWQGYMTNNG 316


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = +2

Query: 257 FHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSS 352
           F+  ++GD  N C       + E+ ++ G  S
Sbjct: 457 FYQSQYGDPINNCEIKAGEIDAERLNNQGIES 488


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 321 GLK*APADVQPFVLSPN 271
           GL+ A A VQP V+S N
Sbjct: 572 GLRVADASVQPQVISGN 588


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,612
Number of Sequences: 438
Number of extensions: 3892
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)