Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1242
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.81 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   3.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   10.0 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   10.0 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   10.0 

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 22  IFKNSCKL*SFLIKNNEQVCVSDFGA 99
           I+K+SC++       +EQ CV  FG+
Sbjct: 144 IYKSSCEIDVEYFPFDEQTCVMKFGS 169


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 22  IFKNSCKL*SFLIKNNEQVCVSDFGA 99
           I+K+SC++       +EQ CV  FG+
Sbjct: 148 IYKSSCEIDVEYFPFDEQTCVLKFGS 173


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 22  IFKNSCKL*SFLIKNNEQVCVSDFGA 99
           I+K+SC++       +EQ C+  FG+
Sbjct: 153 IYKSSCEINVEYFPFDEQSCIMKFGS 178


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 22  IFKNSCKL*SFLIKNNEQVCVSDFGA 99
           IFK+SC++       ++Q C   FG+
Sbjct: 140 IFKSSCEIDVRYFPFDQQTCFMKFGS 165


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 22  IFKNSCKL*SFLIKNNEQVCVSDFGA 99
           IFK++CK+       ++Q C   FG+
Sbjct: 143 IFKSTCKIDITWFPFDDQRCEMKFGS 168


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 22  IFKNSCKL*SFLIKNNEQVCVSDFGA 99
           IFK++CK+       ++Q C   FG+
Sbjct: 106 IFKSTCKMDVAWFPFDDQHCDMKFGS 131


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 22  IFKNSCKL*SFLIKNNEQVCVSDFGA 99
           IFK++CK+       ++Q C   FG+
Sbjct: 106 IFKSTCKIDIAWFPFDDQHCDMKFGS 131


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 22  IFKNSCKL*SFLIKNNEQVCVSDFGA 99
           IFK++CK+       ++Q C   FG+
Sbjct: 106 IFKSTCKIDITWFPFDDQHCDMKFGS 131


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 22  IFKNSCKL*SFLIKNNEQVCVSDFGA 99
           IFK++CK+       ++Q C   FG+
Sbjct: 106 IFKSTCKMDIAWFPFDDQHCDMKFGS 131


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 22  IFKNSCKL*SFLIKNNEQVCVSDFGA 99
           IFK++CK+       ++Q C   FG+
Sbjct: 106 IFKSTCKIDITWFPFDDQHCDMKFGS 131


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +1

Query: 22  IFKNSCKL*SFLIKNNEQVCVSDFGA 99
           I+++SC +       ++Q C+  FG+
Sbjct: 146 IYQSSCTIDVTYFPFDQQTCIMKFGS 171


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 22  IFKNSCKL*SFLIKNNEQVCVSDFGA 99
           IFK++CK+       ++Q C   FG+
Sbjct: 174 IFKSTCKIDITWFPFDDQHCDMKFGS 199


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 22  IFKNSCKL*SFLIKNNEQVCVSDFGA 99
           IFK++CK+       ++Q C   FG+
Sbjct: 174 IFKSTCKIDITWFPFDDQHCDMKFGS 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,562
Number of Sequences: 438
Number of extensions: 2035
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)