Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1241
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.46 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -1

Query: 349 QHSCRSFRGGTNKNSRCRYGY*KDRCTADS 260
           Q  C  + G    N+ C Y   KD C  DS
Sbjct: 320 QVECYKYYGNIMVNAMCAYAKGKDACQMDS 349


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -3

Query: 185 RNDSFAIMMHNKLTRLSENTRDVYRLHEIANE 90
           R+ S   + H  LT +     D Y +H+I+ +
Sbjct: 241 RHSSTLDIDHKMLTPIKSEPIDAYEMHQISKK 272


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 19  GEPKRLSDCGRHSDSANWITRFG 87
           GE + L+   RH +   W+  FG
Sbjct: 231 GESEALARLERHLERKAWVASFG 253


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 352 ATFPYLTASKSVCKKEKK 405
           A  P + ++ S CKK+KK
Sbjct: 568 ARTPSVMSASSTCKKDKK 585


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 206 ARSKTGTRNDSFAIMMHNKL 147
           A  + G RN      MHNKL
Sbjct: 347 AADRPGLRNTELVERMHNKL 366



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 9   PGCRRTKAIERLRSAFR 59
           PG R T+ +ER+ +  R
Sbjct: 351 PGLRNTELVERMHNKLR 367


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +1

Query: 517 CQTCDYDGCN 546
           C  CD+D C+
Sbjct: 747 CHCCDFDACD 756


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 512 SSVRPVTTTDATEPLPSA 565
           S+   VTTT AT  LP+A
Sbjct: 214 STPATVTTTGATTTLPAA 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,927
Number of Sequences: 438
Number of extensions: 2950
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)