Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1239
(628 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 vari... 40 3e-05
DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 vari... 39 5e-05
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 25 0.80
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 24 1.1
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 23 2.4
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 22 4.3
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 22 4.3
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 21 7.4
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 21 9.8
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 9.8
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 9.8
>DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 variant
2 precursor protein.
Length = 94
Score = 39.5 bits (88), Expect = 3e-05
Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 354 CNPQCVCANGYYRNNNDVCVPKKAC-PG 434
C P CVC GY RN VCVP+ C PG
Sbjct: 67 CAPGCVCRLGYLRNKKKVCVPRSKCLPG 94
Score = 26.6 bits (56), Expect = 0.20
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 150 CNPGCVCKPNYRRLSQDDERCVLTTDCPP 236
C PGCVC+ Y L + CV + C P
Sbjct: 67 CAPGCVCRLGY--LRNKKKVCVPRSKCLP 93
>DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 variant
1 precursor protein.
Length = 92
Score = 38.7 bits (86), Expect = 5e-05
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +3
Query: 354 CNPQCVCANGYYRNNNDVCVPKKAC 428
C P CVC GY RN VCVP+ C
Sbjct: 67 CAPGCVCRLGYLRNKKKVCVPRSKC 91
Score = 25.0 bits (52), Expect = 0.60
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 150 CNPGCVCKPNYRRLSQDDERCVLTTDC 230
C PGCVC+ Y L + CV + C
Sbjct: 67 CAPGCVCRLGY--LRNKKKVCVPRSKC 91
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 24.6 bits (51), Expect = 0.80
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 497 WTIRWIRHRAGRSPPGGHRTLTRTSFLRDTNVIVVPVITVCT 372
W + + GR P G T +L DTN I + V T+ T
Sbjct: 176 WALMPVMGVWGRFVPEGFLTSCSFDYLTDTNEIRIFVATIFT 217
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 24.2 bits (50), Expect = 1.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 538 VKKGTSCLKQKENVLQ*K 591
V+KG CLK+KEN + K
Sbjct: 509 VQKGQICLKEKENEIDFK 526
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 23.0 bits (47), Expect = 2.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 159 GCVCKPNYRRLSQDDERCVLTTDCP 233
GC CKP Y + + + C T+CP
Sbjct: 246 GCHCKPGY-QADVEKQEC---TECP 266
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 22.2 bits (45), Expect = 4.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +3
Query: 336 PQLRPYCNPQCVCANGYYRNNN 401
P++ + C +N YY NNN
Sbjct: 301 PKIISSLSNSCNYSNNYYNNNN 322
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 22.2 bits (45), Expect = 4.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 267 SKLHSVVCTSLEDSLWSAHIARHPDSGVD 181
SKL+SV SL+ SL HI+ V+
Sbjct: 301 SKLYSVSVVSLDKSLEVNHISARVGDNVE 329
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 21.4 bits (43), Expect = 7.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -2
Query: 249 VCTSLEDSLWSAHIARH 199
+ T L + W H+ARH
Sbjct: 360 IMTQLREEGWIHHLARH 376
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 21.0 bits (42), Expect = 9.8
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3
Query: 54 YETRVYCKAGCP 89
Y +R+ KAGCP
Sbjct: 120 YSSRLTIKAGCP 131
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.0 bits (42), Expect = 9.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 251 SCALHWRTVCGQHTSLVILTQASIIWFTNAARIT 150
S L W +CG + L I IWFT + I+
Sbjct: 528 SHVLGW--LCGLSSMLCIPGYMIYIWFTTSGTIS 559
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.0 bits (42), Expect = 9.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 251 SCALHWRTVCGQHTSLVILTQASIIWFTNAARIT 150
S L W +CG + L I IWFT + I+
Sbjct: 581 SHVLGW--LCGLSSMLCIPGYMIYIWFTTSGTIS 612
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,267
Number of Sequences: 438
Number of extensions: 4521
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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