Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1234
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   1.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   1.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   3.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.0  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   6.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   6.9  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 98  SKLALVMNHKLNWDCRMYYDQL 163
           SK  L+ +  LNW  R +YD L
Sbjct: 30  SKYQLITSTTLNWLPRTHYDHL 51


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 437 QPIVVDWVTRSSSRQ 481
           QPI   W+TRS +R+
Sbjct: 81  QPISYKWITRSGTRE 95


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 135 GIVACTTISCWTNNQ 179
           G+V  T+++CW  N+
Sbjct: 318 GLVGDTSLACWNENR 332


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 135 GIVACTTISCWTNNQ 179
           G+V+ T + CW  N+
Sbjct: 317 GLVSDTALGCWNENR 331


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -3

Query: 294 QFVLCCFQSVIDEFSVSRSTNICSNLREFALNKETTNILGC 172
           Q +    + +IDE SV +  + CS + E   + + + ++ C
Sbjct: 82  QGIKAVMELLIDENSVKQLVSDCSTISEENPHLKASKLVQC 122


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = +3

Query: 132 IGIVACTTISCWTNNQ 179
           +G+V  + + CW  +Q
Sbjct: 317 VGLVGNSAVGCWNEHQ 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.133    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,676
Number of Sequences: 438
Number of extensions: 2470
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)