Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1233
         (381 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.2  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   4.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   4.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 324 HRHQRQDAHPHRG 362
           H+H     HPHRG
Sbjct: 319 HQHHPSQYHPHRG 331


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 145 SYQQLRQIFAEYEALTGKDIE--DSIKKEFSGSIEKGMLAIAKCVKSKVGF 291
           S  +LR+I +      G D++  D +KK      ++ +     C+  KVGF
Sbjct: 22  SINKLRKIESVCAEENGIDLKKADDVKKGIFDKNDEKLACYVDCMLKKVGF 72


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 29   ENQASMKAQLKPMLKHWPPLVKVNGEPTNQSS 124
            + Q   + Q +  L H+P L  +   PT++ S
Sbjct: 1454 QQQQQQQQQQQQQLNHYPDLHNLYAVPTDKKS 1485


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 300 APVLLDEGHRHQRQDAHPH 356
           +P L++    HQ    HPH
Sbjct: 160 SPPLVESQMHHQMHTQHPH 178


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 198 FSGQSFVLGEDLSQLLIGASDKDGV 124
           F G+  + G+DL    I A D +GV
Sbjct: 288 FFGEKALQGDDLRTANIIADDPEGV 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,436
Number of Sequences: 438
Number of extensions: 1623
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)