Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1232
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.0  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   2.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.2  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   4.2  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   4.2  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   4.2  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   7.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.6  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +3

Query: 453 SGLPQTPESFRKARPFLKPSEEDDYYTLSSRGHKSDYHH 569
           S + +T E  +K +  L PSE      +  +  +  +HH
Sbjct: 532 SSMKETEEEKKKTKQSLSPSENQSKMEILPKTTQRQHHH 570


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +3

Query: 525 YYTLSS-RGHKSDYH--HSKQYENR 590
           Y +L+S R HKS YH  HSK  + R
Sbjct: 42  YSSLNSLRNHKSIYHRQHSKNEQQR 66


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 403 LYESIPFFFFTS 368
           LYE  P+FFF S
Sbjct: 162 LYEMCPYFFFNS 173


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 403 LYESIPFFFFTS 368
           LYE  P+FFF S
Sbjct: 162 LYEMCPYFFFNS 173


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 503 EERSCFPKTFWC 468
           EER  +P T WC
Sbjct: 26  EERIIYPGTLWC 37


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 503 EERSCFPKTFWC 468
           EER  +P T WC
Sbjct: 31  EERIIYPGTLWC 42


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 503 EERSCFPKTFWC 468
           EER  +P T WC
Sbjct: 31  EERIIYPGTLWC 42


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +1

Query: 454 QDYRRHQKVFGKQDLSSNHLKKMTT 528
           +D+ + Q++  ++D+S  ++KK  T
Sbjct: 49  KDFIKMQELLQEEDISEGNIKKYLT 73


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 382 RMVLIHIIHQLVVENSILTGKMVAQDYRRHQKVFGKQDLSSNH 510
           R V IH++ +L+V     T    +    R Q    K+ + S+H
Sbjct: 342 RRVFIHVLPRLLVMRRYNTPSKRSDYDSRPQYQIDKRSMGSHH 384


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +1

Query: 421 ENSILTGKMVAQDYRRHQKVFGKQDLSSNHLKKMTTIHYLLEVINLITITQSSMRTEAHQ 600
           E ++   KM    + RH K++ + D   N  K       LLE+I+ +T     ++ E ++
Sbjct: 208 EYAMAVMKMCDILHLRHTKIWLRPDWLFNLTKYGKNQIKLLEIIHGLTKKVIQLKKEEYK 267

Query: 601 KQSRH 615
              R+
Sbjct: 268 SGKRN 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,502
Number of Sequences: 438
Number of extensions: 2953
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)