Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1219
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   1.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   2.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   2.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   2.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.7  

>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 149 PHSPPRGLPPTTEMQRSILLTK 84
           P SP    PPT  +   ILL K
Sbjct: 26  PASPTLSTPPTLNLMEQILLAK 47


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 14 NSARGDSVGKSMPIL 58
          N  RG+S+ KS+PIL
Sbjct: 20 NILRGESLNKSLPIL 34


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
          protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 14 NSARGDSVGKSMPIL 58
          N  RG+S+ KS+PIL
Sbjct: 20 NILRGESLNKSLPIL 34


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
          protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 14 NSARGDSVGKSMPIL 58
          N  RG+S+ KS+PIL
Sbjct: 20 NILRGESLNKSLPIL 34


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 575 EKQNMSSLLSQHS 613
           EK+N+S ++ QHS
Sbjct: 354 EKKNLSKVIDQHS 366



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 163 DTTPIHAWL 189
           DT PIH W+
Sbjct: 535 DTVPIHTWI 543


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,550
Number of Sequences: 438
Number of extensions: 3551
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)