Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1217
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    26   0.26 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.5  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   7.5  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   7.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.9  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 400 VFAFVGTIYLYFFMPETEGKTLQ 468
           +FA +GTI+L+ F P      L+
Sbjct: 211 IFAMIGTIFLWLFWPSFNSAALE 233


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 152 EDTESGTCNLAYILSPVLERPVPRSASII 66
           ED+  G C + Y ++P+ +  + RS  ++
Sbjct: 171 EDSVGGKCEVLYDIAPLSDFVIHRSPELV 199


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 379 PTA*ANSPNRLTFLIPRTSPRNSKQQRFLEL 287
           P +   +PN+    +P T  +NSKQ  F +L
Sbjct: 664 PDSFIEAPNKTLPSLPSTLTKNSKQGLFSKL 694


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 385 FAVYAVFAFVGTIY 426
           FA    FAFV TIY
Sbjct: 306 FAAMVEFAFVNTIY 319


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 136 PDSVSSYDPATFPVEKSYIPQALLYSLA 219
           PD     D    P E  ++P  +LY+ A
Sbjct: 86  PDDYGGVDTLHVPSEHIWLPDIVLYNNA 113


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 221 CLLGSVYLGCCLEKCSLL 274
           C++   Y+ C LEK   L
Sbjct: 109 CMVARKYIDCALEKMKFL 126


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 221 CLLGSVYLGCCLEKCSLL 274
           C++   Y+ C LEK   L
Sbjct: 109 CMVARKYIDCALEKMKFL 126


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 499 SIPLYNNLRCLEASS 455
           S  +Y N  CL+ASS
Sbjct: 636 STTIYENQNCLDASS 650


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,012
Number of Sequences: 438
Number of extensions: 4024
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)