Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1210
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   3.7  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   4.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   6.5  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   6.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   6.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   8.6  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   8.6  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 560 FS*CFVGVLDGFMSIFCVFSIYVNPAAQVS 471
           FS C       F+S   +F IYV+P+A  S
Sbjct: 117 FSTCSSHPTAAFISYGTLFFIYVHPSATFS 146


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 560 FS*CFVGVLDGFMSIFCVFSIYVNPAAQVS 471
           FS C       F+S   +F IYV P+A  S
Sbjct: 116 FSTCSSHPTAAFISYGTLFFIYVQPSATFS 145


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 60  MWIILYLPFILCTILYAV 113
           +++I +LPF  C I+ A+
Sbjct: 627 VFLICWLPFFTCNIMDAI 644


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 45  VRIGEMWIILYLPFILCTILYAVTALYG 128
           VRI ++   ++  F+L    YA  AL G
Sbjct: 278 VRIAKVAFTIFFLFLLAWTPYATVALIG 305


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -3

Query: 527 FMSIFCVFSIYVNPAAQVSC 468
           F+S+  + S +V P   + C
Sbjct: 11  FLSVILITSYFVTPTMSIKC 30


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 45  VRIGEMWIILYLPFILCTILYAVTALYG 128
           VRI ++   ++  F+L    YA  AL G
Sbjct: 278 VRIAKVAFTIFFLFLLAWTPYATVALIG 305


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 240 KNGTIYARVMKHMNK 284
           KNG  Y R+ KH  K
Sbjct: 168 KNGETYLRIKKHAVK 182


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 335 VARQIFSVSNVPFNTQ*FVHMLHHTSVNGSI 243
           VAR+ +S ++     Q  +  +HH   NG +
Sbjct: 1   VAREFYSEADASHCIQQILESVHHCHHNGVV 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,381
Number of Sequences: 438
Number of extensions: 3469
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)