Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1200
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.7  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   6.2  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   6.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.2  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    21   8.2  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 341 GLNPFLAFAFRYTKTFYFGFFHLIVK 264
           GL+P+L F    T+ FY+    L  K
Sbjct: 268 GLSPYLRFGCLSTRLFYYQLTDLYKK 293


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 181 RVRKKKINKILKNHYRLPN*LKNYTTYCMYF 89
           R R K+   I  N+Y   N   NY +  +Y+
Sbjct: 295 RERSKETKIISSNNYNYKNYNNNYNSKKLYY 325


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 181 RVRKKKINKILKNHYRLPN*LKNYTTYCMYF 89
           R R K+   I  N+Y   N   NY +  +Y+
Sbjct: 306 RERSKETKIISSNNYNYKNYNNNYNSKKLYY 336


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 305 TKTFYFGFFHLIVKCNFLSLSFV 237
           T+ FY     +I+KCN   +SF+
Sbjct: 653 TRFFYPDRKQVILKCNIQDMSFL 675


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 495 RREILVSFVWLCS 457
           R  +L++ VW+CS
Sbjct: 162 RAAVLIAIVWICS 174


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 305 TKTFYFGFFHLIVKCNFLSLSFV 237
           T+ FY     +I+KCN   +SF+
Sbjct: 743 TRFFYPDRKQVILKCNIQDMSFL 765


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 327 SSVCVSLHENFLFWFF 280
           +++C SL+ + LFW F
Sbjct: 26  NNMCTSLNLSNLFWLF 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,069
Number of Sequences: 438
Number of extensions: 2902
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)