Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1187
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       31   0.012
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.0  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   7.0  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   7.0  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 30.7 bits (66), Expect = 0.012
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -1

Query: 559 SWIASIQCSVTCVVVPSQITQPHVETGISQHIT*TFFSTHRNEIS 425
           +WI S+ CS+   +V    T P+V T  SQ +T   F T+ +EI+
Sbjct: 160 AWIGSVVCSLPQTIVFHLETHPNV-TWYSQCVTFNAFPTYTHEIT 203


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 554 DRFYSVFCDLCSSSLSDYPAT 492
           D  Y V CD CS  +   P T
Sbjct: 349 DTTYRVVCDACSMGVKYIPNT 369


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 180 YYCLS**EVNLRSAKMKCSCP 242
           + CL    +N +S  + C+CP
Sbjct: 45  HLCLPAPRINSKSPLLSCACP 65


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 180 YYCLS**EVNLRSAKMKCSCP 242
           + CL    +N +S  + C+CP
Sbjct: 45  HLCLPAPRINSKSPLLSCACP 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,729
Number of Sequences: 438
Number of extensions: 3333
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)