Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1184
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   1.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.1  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +3

Query: 264 TEERMRKYLDQPIFSRIKYEH---PEYFKKIIPISGDITAPKL 383
           TE    KY+D  IFSR + E    PE  +  I I  D TA  L
Sbjct: 148 TEVFPDKYMDSGIFSRAREEANVVPEGARVPIEIPRDYTASDL 190


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = -2

Query: 334 YSGCSYFIREKMG*SRYFLIRSSVFDPFLSRIKM*MLTMPGHEYASFSTYA----FPRNP 167
           Y G  Y    K+  +RY+L R S   P+L          PG  Y    TY+    FP+ P
Sbjct: 254 YRGEEYLYSHKLLLNRYYLERLSNDLPYLEEFDWQKPFYPG--YYPTMTYSNGLPFPQRP 311

Query: 166 V 164
           +
Sbjct: 312 I 312


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 33  NCDQLQIIFKFRVISKMSHNGTLDEHYQTVREF 131
           NC+ L    KF     M+H G  D+ Y+  R+F
Sbjct: 183 NCNHLMT--KFEPDLDMNHPGFADKEYRARRKF 213


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 78  KMSHNGTLDEHYQTVREFYDGKSV 149
           K  HNGT    YQ V ++++   +
Sbjct: 407 KSEHNGTNGYQYQVVGKWFNSLDI 430


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 78  KMSHNGTLDEHYQTVREFYDGKSV 149
           K  HNGT    YQ V ++++   +
Sbjct: 497 KSEHNGTNGYQYQVVGKWFNSLDI 520


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 414 INEVSIVIHSAASVKLNDHLKFTLN 488
           + +V + I  +  V+LN  L+ TLN
Sbjct: 117 VKDVLVSIDPSGMVRLNTRLQATLN 141


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 185 RLSKESGRSCNKNGFTIVKFPHG 117
           R SK+ G       F   ++PHG
Sbjct: 258 RTSKDQGTIGESEVFDTTRYPHG 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,760
Number of Sequences: 438
Number of extensions: 3022
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)