Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1182
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.41 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   0.94 
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    24   1.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   1.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 662 SNRNALLLHGRNRQGGGTYPHGLTRGPTTSKKCFDVDKTALFWFIF 525
           +  NA+LL GR+++     P G T       +  ++D+ +  +F F
Sbjct: 366 TKENAMLLSGRSQKSTTGPPPGPTPAQKARMRALNIDRVSRVFFPF 411


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 401 IFEFNCINVTRHFRTRQ*FCCIEFSSWT 318
           IF+ +C    R+F   Q  C ++F SWT
Sbjct: 140 IFKSSCEIDVRYFPFDQQTCFMKFGSWT 167


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 214 KARFKELEEK*GGTRLSLNGGLK 282
           +A++KE+EEK   T   L G LK
Sbjct: 125 EAQYKEMEEKVSSTLSGLEGELK 147


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 214 KARFKELEEK*GGTRLSLNGGLK 282
           +A++KE+EEK   T   L G LK
Sbjct: 141 EAQYKEMEEKVSSTLSGLEGELK 163


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 134 WSRGWICWAYIS 99
           WS G +CW  +S
Sbjct: 822 WSMGIVCWEVMS 833


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 274 GLKHSCPARTLELTPVHEENSIQQNHCRVRKCRVT 378
           G+K++  +  +E   VHEENS  +++ +     +T
Sbjct: 214 GVKNNHVSSKVEGNGVHEENSPLEDNIKCEPLELT 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,169
Number of Sequences: 438
Number of extensions: 4482
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)